Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866278:139866308:[+] chr11:65191504:65191526:[+] nonBSJ supported Exon

circRNA 5':AUGUCUUCCAGAAAAUCCUUGUCUUCCCUCA 3'


            | ||:||||| ||||:|||||


target  3':GAGAGGAGGUCC--------CAGAGGGGAGG 5'

 -28.40 5 KARR-seq
chrX:139866316:139866364:[+] chr11:65191498:65191530:[+] nonBSJ supported Exon

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAA 3'


            |||: ||:|||||| ||| |:||| ||||


target  3':CCGAGAG------------AGGAGGUCCCAGAGG----GGAGGACGUUA 5'

 -30.20 6 KARR-seq
chrX:139865648:139865671:[+] chr11:65192130:65192161:[+] nonBSJ supported Exon

circRNA 5':AAUACAGAUCUU-------CCAGCUA--AUCCA 3'


            |:|||||| |||:|| |:||


target  3':GUGUGUCUAAAUCCUUACUGGUUGAACAUGGG 5'

 -17.70 1 KARR-seq
chrX:139865648:139865666:[+] chr11:65192136:65192161:[+] nonBSJ supported Exon

circRNA 5':AAUACAGAUCUU-------CCAGCUA 3'


            |:|||||| |||:||


target  3':GUGUGUCUAAAUCCUUACUGGUUGAA 5'

 -14.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866364:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC