Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866247:139866287:[+]	chr11:61914173:61914238:[+]	nonBSJ supported	CDS	circRNA 5': UUCCAACAAA---GCCA----------------UGUCUUCC--AGACUA-UCCAUGU----CUUCCA 3' \|\|\|\| \| \|\|\|\| :\|:\|\|\|\|\| \|\| \|: \|\|\| \|\|: \|\|\|\|\| target 3':CGAGGGCGACGAGACGGUCGGCGAAUCGGAGCCGGCGGAAGGCGUC-GGCGAGG-ACGAGGAGAAGGA 5'	-27.80	3	KARR-seq
chrX:139866212:139866287:[+]	chr11:61914142:61914212:[+]	nonBSJ supported	CDS	circRNA 5':UCCA-GGAAAUCCGUGUCUUC-CAGCAAGUCCA---CGUCUUCCAACAAAGCCAUGUCUUC-----CAGACUAUCCAUGUCUUCCA 3' \|\| \|\| \|\|\|: \| \|:\| \|\|\|\| \|\|\| \| \|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\| \|\|:\| \|\| target 3':CGGAGCC----GGCGGA-AGGCGUCGGCGAGGACGAGGAGAAGGAAGA--------AGAAGACGUCGUC-GAGAACCACGGC-GGC 5'	-37.00	1	KARR-seq
chrX:139866214:139866287:[+]	chr11:61914142:61914214:[+]	nonBSJ supported	CDS	circRNA 5':CAGGAAAUCCG-UGUCUUCC--AGCAAGUCCA---CGUCUUCCAACAAAGCCAUGUCUUC-----CAGACUAUCCAUGUCUUCCA 3' \|\| \|\| \| :\|:\|\|\|\|\| \|\|\| \|\|\| \| \|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\| \|\|:\| \|\| target 3':AUCGG--AGCCGGCGGAAGGCGUCGGCGAGGACGAGGAGAAGGAAGA--------AGAAGACGUCGUC-GAGAACCACGGC-GGC 5'	-36.10	2	KARR-seq