Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866654:139866691:[+] chr10:70719865:70719910:[+] nonBSJ supported CDS

circRNA 5':GCUCGUCU------UCCAA-CAUCUCCACGUCUUCCAGCAUC-UCU 3'


            ||| ||| |||| ||| ||| |||| | |||| |||


target  3':AGAG-AGAUCAAAGAGGUAAGUAAAGGAAAAGAAAGAAGUAGAAGAA 5'

 -21.00 2 KARR-seq
chrX:139866650:139866691:[+] chr10:70719865:70719911:[+] nonBSJ supported CDS

circRNA 5':AUCUGCUCGUC---UUCCAA-CAUCUCCACGUCUUCCAGCAUC-UCU 3'


            ||| ||| :|||| ||| ||| |||| | |||| |||


target  3':AAGA-GAGAUCAAAGAGGUAAGUAAAGGAAAAGAAAGAAGUAGAAGAA 5'

 -22.40 1 KARR-seq
chrX:139866651:139866691:[+] chr10:70719865:70719911:[+] nonBSJ supported CDS

circRNA 5': UCUGCUCGUC---UUCCAA-CAUCUCCACGUCUUCCAGCAUC-UCU 3'


            ||| ||| :|||| ||| ||| |||| | |||| |||


target  3':AAGA-GAGAUCAAAGAGGUAAGUAAAGGAAAAGAAAGAAGUAGAAGAA 5'

 -22.40 1 KARR-seq