Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866602:139866638:[+] chr10:70100993:70101020:[+] nonBSJ supported CDS

circRNA 5':AUGUCUU---C-CUAUAUCUCCAGGUCUUCCAGCAUCUCCA 3'


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target  3': ACAGUGUUUGAGAUGUAGA------------CGAAGAGGA 5'

 -18.90 1 KARR-seq
chrX:139866580:139866638:[+] chr10:70100993:70101039:[+] nonBSJ supported CDS

circRNA 5': AGCUAC---GUCUUCCAACAAAUCCAUGUCUU---C-CUAUAUCUCCAGGUCUUCCAGCAUCUCCA 3'


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target  3':GUCGAUGACGUAGAAGUAC--------ACAGUGUUUGAGAUGUAGA------------CGAAGAGGA 5'

 -29.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866580:139866638:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC