Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866304:139866343:[+] chr10:5807863:5807897:[-] nonBSJ supported 3UTR

circRNA 5':CCUCAAAUCCAUAGCUUCCGAA-AAAUCCAGGUCUUCCAGG 3'


            ||| ||||| ||| ||| ||||:||| ||:


target  3': GAG---AGGUAA--AAGUAAUGUUUUCGUCCGGAAUGUUA 5'

 -19.90 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866304:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866304:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC