Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866326:139866361:[+]	chr1:243688078:243688108:[-]	nonBSJ supported	Intron	circRNA 5':AAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGC 3' \|\|:\|\| \|\|:\|\|\|\| \| \|\|: \|:\| \|\|\| target 3':AUUGGG---AGGAGGUAUAUU-GACAUUGGA-GUCC 5'	-17.80	2	KARR-seq
chrX:139866302:139866353:[+]	chr1:243688080:243688120:[-]	nonBSJ supported	Intron	circRNA 5':UCCCUCAAAUCCAUAGCUUCCGAAAAAUC-CAGGUCUUCCAGGAAAUCCGUGU 3' \|\|\|\|\| \|\|\|\|\|\| \| \| \|\|:\| \|\|\|\| :\|\|\|\| \|:\|\| target 3':UGGGAGG--AGGUAUAUU-GACA--UUGGAGUCC-------UCUUUCUGUACU 5'	-25.50	2	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866302:139866353:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC