Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865920:139865970:[+] chr1:223940535:223940594:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCCAAUAUAUGUCUUC-CUGA--AGA---UCCAC-GUCUUC---CAGAAAAUCCA 3'


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target  3':AAAGGUGAAGAACAUCCAU-AGCGACCACUCUCACAGACCCCAGUCCAAUGUCUAG-AGGUC 5'

 -16.50 3 KARR-seq
chrX:139865942:139865973:[+] chr1:223940569:223940598:[+] nonBSJ supported CDS

circRNA 5':CUGAAGAUCCACGUCUUCCAGAAAAUCCAUGU 3'


            ||| ||||| |||| || ||| ||


target  3': ACUCAAAGGUGAAGAACAUCCA-UAGCGACC 5'

 -11.80 4 KARR-seq
chrX:139865920:139865969:[+] chr1:223940536:223940594:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCCAAUAUAUGUCUUC-CUGA--AGA---UCCAC-GUCUUC---CAGAAAAUCC 3'


            ||||| || || ||| ||| || ||| |||| |||


target  3':AAAGGUGAAGAACAUCCAU-AGCGACCACUCUCACAGACCCCAGUCCAAUGUCUAG-AGGU 5'

 -14.80 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:223940535:223940594:[+] target - chr1:223940540-223940541 G>T PACA-CA ICGC
chr1:223940536:223940594:[+] target - chr1:223940540-223940541 G>T PACA-CA ICGC