Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866531:139866560:[+]	chr1:205689660:205689692:[-]	nonBSJ supported	CDS	circRNA 5': UG-UCUUCCAGAAAAUCCACGUCUUCCA-GAA 3' \|\| \|\|\|\|\|\| \| :\|\|\|\|:\|\|\|\|\|\|\| \|\| target 3':AACAAGAAGGAGUGACGGGUGUAGAAGGUACUC 5'	-31.10	1	KARR-seq
chrX:139865487:139865567:[+]	chr1:205689643:205689704:[-]	nonBSJ supported	CDS	circRNA 5':UCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCA-GCAAAUCCA-GUCUUCC---AGCAAUUACUGGUCUU 3' \|\| ::\|\|:\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\| :\| :\|\|\| :\|\|\|\|\|\| \|\|\|\| :\| \|\| \|\|\| target 3':CGGAGUAGGAGG-------------AGAAGAACA--------AGAAGGAGUGAC-GGGUGUAGAAGGUACUCGUAGA-GAG-AGAC 5'	-38.40	2	KARR-seq
chrX:139866062:139866086:[+]	chr1:205696829:205696861:[-]	nonBSJ supported	CDS	circRNA 5':GGUCUUCCUGAAAA-----UCUA---CGUCUUC 3' \|\|\|\|\|\|\|\|\| \|\| \|\|:\| \|\|:\|\|: target 3':AUAGAAGGACACUUAAGAAAGGUCUAGCGGAGA 5'	-19.20	1	KARR-seq
chrX:139865474:139865516:[+]	chr1:205689663:205689703:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUCCGGACAAUCCAUGUCUUCCAAGAAGC-UCCAAGUCUUC 3' \|\|\|\|\|\| \|\| :\|\|\|::\|\|\|\|\|\|\| \| \|\|\| \|\| \|\|\|: target 3':AAGAAGGAGUGACGGGUGUAGAAGGUAC-UCGUAGAG--AGAGA 5'	-35.70	2	KARR-seq
chrX:139866382:139866414:[+]	chr1:205688745:205688775:[-]	nonBSJ supported	CDS	circRNA 5':AGCCAU-GUCUUCCAUCAAAUUAAUGUCUUCCAG 3' \|\|\|\|\| \|\|\| \| \|\|\| \|:\| ::\|\|\|\|\|\|\| target 3':ACGGUAUCAGU-GAUAGC--AGUAGUAGAAGGUA 5'	-23.00	1	KARR-seq
chrX:139865965:139866033:[+]	chr1:205689694:205689783:[-]	nonBSJ supported	CDS	circRNA 5':AAUCCAUGUCUUCC-AGAAAAUCCAUGUCUUCCA--GUAACCUCCCA---------------------GUCUUCCAGAAAAUC--CAC-GUCUUCC 3' \|\|\| \| \|\|\| \|\|\|\| \|\| \|\|\| \|: \|\|\| \|\| :\|\|\|\|\| \|\|\| \|\|\| :\|\|:\|\| target 3': UAGAGAGAGACAAAUCUUCG----AC-GAAAUCUACGGCGGACGGCAACAACCGCGUGUAAAAAUACUAGAAGAAAAAGUAGAAGUGAUAGGAGA 5'	-20.40	1	KARR-seq
chrX:139866057:139866072:[+]	chr1:205693097:205693113:[-]	nonBSJ supported	CDS	circRNA 5':AUUUGGGUCUUC-CUGA 3' \|:\|\|:\|\|\|:\|\| \|\|: target 3':AAGACUCAGGAGUGAUA 5'	-15.90	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr1:205689694:205689783:[-]	target	-	chr1:205689733-205689734	C>T	PRAD-CA	ICGC