Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866141:139866192:[+] chr1:66708889:66708940:[+] nonBSJ supported Intron

circRNA 5':CCAGACUAUCCA-UGUCUUCCAGAAAAUCCUUGUCUUCCCUUA----AAUCUAUAGC 3'


            |||||: ||| ||:||| :||| |||| ||| ||||||:||


target  3':AGUCUGG--GGUGACGGAACACAAAGAC--GACA-AAGGAAAUUUACUUAGAUGUCU 5'

 -28.70 2 KARR-seq
chrX:139866141:139866184:[+] chr1:66708902:66708940:[+] nonBSJ supported Intron

circRNA 5':CCAGACUAUCCA-UGUCUUCCAGAAAAUCCUUGUCUUCCCUUAAA 3'


            |||||: ||| ||:||| :||| |||| ||||


target  3':AGUCUGG--GGUGACGGAACACAAAGAC--GACA-AAGGAAAUU 5'

 -21.70 2 KARR-seq