Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr5:109117106:109117162:[+] chr18:74690973:74691047:[-] nonBSJ supported 3UTR

circRNA 5': GGAACUUUAUCAGAUUUUU---------UUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            | |||:| ||| ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':ACAUUGAGAGAGUAGUAGCUCCGAUAUAUAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -28.60 11 RIC-seq
chr5:109117107:109117162:[+] chr18:74690975:74691047:[-] nonBSJ supported 3UTR

circRNA 5':GAACUUUAUCAGAUUUUU---------UUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            ||||:| ||| ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':AUUGAGAGAGUAGUAGCUCCGAUAUAUAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -28.10 4 RIC-seq
chr5:109117124:109117162:[+] chr18:74691001:74691047:[-] nonBSJ supported 3UTR

circRNA 5':UUUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':UAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -24.30 13 RIC-seq
chr5:109117139:109117162:[+] chr18:74691018:74691047:[-] nonBSJ supported 3UTR

circRNA 5':AAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            |||| |:||||| |||||: |||


target  3':AUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -17.10 1 RIC-seq
chr5:109125160:109125183:[+] chr18:74691790:74691815:[-] nonBSJ supported 3UTR

circRNA 5': GGAUUUGAAACAAAAA-UCA-CAAGA 3'


            |||:|: |||| :|| | |


target  3':ACCUGAGA-UUGUCGACGGGUCGGGCG 5'

 -9.80 11 RIC-seq
chr5:109153092:109153105:[+] chr18:74691715:74691735:[-] nonBSJ supported 3UTR

circRNA 5':AGCG----CAGU---UUGGGA 3'


            ||| |||: |||||


target  3':GCGCUUAAGUCGAUUAACCCC 5'

 -13.10 53 RIC-seq
chr5:109153095:109153105:[+] chr18:74691722:74691735:[-] nonBSJ supported 3UTR

circRNA 5':GCAGU---UUGGGA 3'


            |||: |||||


target  3':AGUCGAUUAACCCC 5'

 -10.80 1 RIC-seq
chr5:109153109:109153126:[+] chr18:74691708:74691726:[-] nonBSJ supported 3UTR

circRNA 5':AGCAAAUACUAU--UUCAGA 3'


            || |:|| |||||


target  3':ACGG-UGUGCGCUUAAGUCG 5'

 -8.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:109117106:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117107:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117124:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117139:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC