Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr5:109106123:109106180:[+] chr18:74691197:74691230:[-] nonBSJ supported 3UTR

circRNA 5':UUGUGGACCU-GAUCCUAAAAUAUGCUGCCAGUUUGAUUUUAAACGUCUUCCUGGAGGC 3'


            ||:|:| || ||||||: |:|||


target  3':CGCGCUUUCCUCU-------------ACGGUCGCCCACAAUU-----------CUUCC 5'

 -14.90 6 RIC-seq
chr5:109117106:109117162:[+] chr18:74690973:74691047:[-] nonBSJ supported 3UTR

circRNA 5': GGAACUUUAUCAGAUUUUU---------UUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            | |||:| ||| ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':ACAUUGAGAGAGUAGUAGCUCCGAUAUAUAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -28.60 11 RIC-seq
chr5:109117107:109117162:[+] chr18:74690975:74691047:[-] nonBSJ supported 3UTR

circRNA 5':GAACUUUAUCAGAUUUUU---------UUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            ||||:| ||| ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':AUUGAGAGAGUAGUAGCUCCGAUAUAUAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -28.10 4 RIC-seq
chr5:109117124:109117162:[+] chr18:74691001:74691047:[-] nonBSJ supported 3UTR

circRNA 5':UUUGAUGCGC-UGG-AUAAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            ||:||: :| ||| || |||| |:||||| |||||: |||


target  3':UAAUUAUCUGUACCAUAAUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -24.30 13 RIC-seq
chr5:109117139:109117162:[+] chr18:74691018:74691047:[-] nonBSJ supported 3UTR

circRNA 5':AAAGCAG--AUGAAAC--UCAGAG--AGAC 3'


            |||| |:||||| |||||: |||


target  3':AUUCGGGUGUGCUUUGUAAGUCUUAAUCUU 5'

 -17.10 1 RIC-seq
chr5:109125160:109125183:[+] chr18:74691790:74691815:[-] nonBSJ supported 3UTR

circRNA 5': GGAUUUGAAACAAAAA-UCA-CAAGA 3'


            |||:|: |||| :|| | |


target  3':ACCUGAGA-UUGUCGACGGGUCGGGCG 5'

 -9.80 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:109106123:109106180:[+] circRNA - chr5:109106178-109106179 G>T LICA-CN ICGC
chr5:109117106:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117107:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117124:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC
chr5:109117139:109117162:[+] circRNA - chr5:109117158-109117159 G>A PACA-CA ICGC