Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr17:20107833:20107899:[+] chr11:65209692:65209754:[+] nonBSJ supported Exon

circRNA 5':GAAUGAAG-GUGGAGAAAAGGCUGC-GCUUGAGUCCCAAGUUCGGGAACUUUUGGCAGAAGCC--AAAGCA 3'


            ||||| ||| | : ||| ||:| ||||| :| |:|||| :|||| ||| || ||


target  3':AUUACUAAACACGUAACGGUGGACUCCGGA--CAGGGGGUA--CUCUUG----UCGUCGUCGCACUUCCGC 5'

 -40.30 1 RIC-seq
chr17:20107851:20107899:[+] chr11:65209692:65209744:[+] nonBSJ supported Exon

circRNA 5':GGC--UG-CGCUUGA-----GUCCCAAGUUCGGGAACUUUUGGCAGAAGCC--AAAGCA 3'


            || || |:|:||| ||||| :| |:|||| :|||| ||| || ||


target  3':ACGUAACGGUGGACUCCGGACAGGGGGUA--CUCUUG----UCGUCGUCGCACUUCCGC 5'

 -35.90 1 RIC-seq
chr17:20108049:20108105:[+] chr11:65191114:65191177:[+] nonBSJ supported Exon

circRNA 5':UGAGG-AGAAGAACAA----GAACUUUCAGAAAGAGCUUU----CC-GAUCUAGAGGAAGAAAACCG 3'


            |||| ||||| || ||: ||: ||||| ||| || :|:||||||:||: ||


target  3':CCUCCUUCUUCCCCACCUCACUCGAGUGUUCUUCUC-AAAUCGCGGUUUGGAUCUCUUUUCA--GGU 5'

 -33.90 1 RIC-seq
chr17:20108386:20108404:[+] chr11:65190588:65190619:[+] nonBSJ supported Exon

circRNA 5':CCCCUGU---CCUCC----------ACCAGUA 3'


            |||||: ||||| |||||:


target  3':AGGGACGGAAGGAGGAAGGUGUGUCUGGUCGC 5'

 -25.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:20107833:20107899:[+] circRNA - chr17:20107856-20107857 C>T PACA-CA ICGC
chr17:20107851:20107899:[+] circRNA - chr17:20107856-20107857 C>T PACA-CA ICGC