All the circRNA-target RNA interaction data in CircTarget database can be downloaded.
| File name | Whole circRNA-target RNA Interactome |
|---|---|
| All data | All data.rar |
| Neuron | Neuron.rar |
| HeLa | HeLa.rar |
| GM12878 | GM12878.rar |
| HT29 | HT29.rar |
| Human Hippocampus | Human_Hippocampus.rar |
| HepG2 | HepG2.rar |
| K562 | K562.rar |
| hNPC | hNPC.rar |
| H1-hESC | H1-hESC.rar |
| IMR90 | IMR90.rar |
| Mouse Hippocampus | Mouse_Hippocampus.rar | GM12892 | GM12892.rar | A549 | A549.rar | mESC | mESC.rar |
Download file formats
1. circRNA ID: The identifier of circRNA from circBase or circAtlas 3.0.
2. Ensembl ID: The Ensembl gene identifier for the target gene.
3. Gene name: The official gene symbol of the target gene. If a symbol is not available, the Ensembl gene ID is used as a fallback.
4. Gene Type: The biotype of the target gene (e.g., protein-coding, lncRNA, miRNA), as annotated in the Ensembl database.
5. Chimeric read count: The number of sequencing reads supporting the circRNA–target RNA interaction.
6. P-value: The statistical significance of the interaction, derived from Monte Carlo simulations comparing the observed chimeric read count against a null distribution of counts from randomly simulated interactions (100,000 iterations).
7. Cell line/Tissue: Sample where the interaction is observed.
8. Species: The organism of the sequenced sample.
9. Interaction type: Classification of the circRNA-mediated interaction based on the supporting evidence, categorized as either "BSJ-supported" or "non-BSJ-supported".
10. Detection Method: The experimental methodology used to capture the circRNA–target RNA interaction.